
QuickBooks Desktop for Nonprofits: A Getting Started Guide
Track donors, grants and programs without an accounting degree.
Nonprofit bookkeeping has its own language. Donors instead of customers, programs instead of departments, restricted funds, in-kind gifts, statements of activities. If you're a treasurer or office manager who inherited the books, it can feel like learning accounting twice.
QuickBooks Desktop handles nonprofits well, especially the Nonprofit edition of QuickBooks Premier. This guide walks you through a clean setup that will keep your board, your grantors and your accountant happy.
Which Version Should a Nonprofit Use?
QuickBooks Premier includes a Nonprofit edition with a nonprofit chart of accounts, donor and grant terminology, and reports like the Statement of Financial Position and Statement of Activities. It's the best fit for most small and mid-sized organizations.
QuickBooks Pro can work for very small groups with simple books, but you'll spend more time customizing. Enterprise is for larger organizations with many staff in QuickBooks or complex requirements.
Step 1: Choose the Nonprofit Edition
When you create your company file in Premier, choose Nonprofit as your industry. If Premier is already installed in another edition, go to File > Toggle to Another Edition and select Premier Nonprofit.
Step 2: Set Up a Nonprofit Chart of Accounts
The Nonprofit edition gives you a sensible starting chart of accounts. Review it with your accountant and keep it simple. Typical income accounts include:
- Individual Contributions
- Corporate and Foundation Grants
- Government Grants
- Program Service Fees
- Special Events Income
- In-Kind Contributions
Organize expenses so they can later be grouped into the three functional categories nonprofits report on: Program Services, Management and General, and Fundraising.
Step 3: Use Classes for Programs
Classes are the secret weapon for nonprofits. Turn them on under Edit > Preferences > Accounting > Use class tracking, then create a class for each program (Food Pantry, Youth Mentoring, Adult Literacy) plus Admin and Fundraising.
Tag every income and expense line with a class. That lets you produce a Statement of Activities by program and makes functional expense reporting far easier at year-end.
Shared costs: Rent and salaries often cover several programs. Split them across classes using a reasonable basis, like square footage or time spent, and document how you did it.
Step 4: Track Donors
In the Nonprofit edition, customers are called Donors. Add each donor with their contact details. Record gifts with Sales Receipts for money received immediately, or Pledges (invoices) for promises to give. This builds a donation history you can report on and use for year-end acknowledgment letters.
Step 5: Track Grants and Restricted Funds
For grants and restricted gifts, the cleanest approach for most small nonprofits is:
- Create a job under the grantor for each grant, so income and expenses can be reported per grant
- Use a separate net assets with donor restrictions equity account for restricted funds
- Record releases from restriction when the money is spent for its intended purpose
Your accountant can help you set the exact structure, especially for government grants with strict reporting rules.
Step 6: Record In-Kind Donations
Donated goods and services are recorded at fair value as both income (In-Kind Contributions) and an expense or asset. They matter for your Form 990 and for showing the true cost of your programs.
Reports Your Board Will Want
| Report | What it shows |
|---|---|
| Statement of Financial Position | Assets, liabilities and net assets (the nonprofit balance sheet) |
| Statement of Activities | Income and expenses (the nonprofit profit and loss) |
| Statement of Activities by Class | Income and expenses for each program |
| Donor Contribution Summary | Total giving by donor |
| Budget vs. Actual by Program | How each program is tracking against its budget |
| Biggest Donors and Grants | Your top supporters at a glance |
Tips for Treasurers
- Reconcile every account monthly. Boards trust numbers that tie to the bank.
- Separate duties where you can. The person who opens donations shouldn't be the only person recording them.
- Back up after every session and keep a copy off-site.
- Close each year with a closing date and password under Edit > Preferences > Accounting so prior years can't be changed by accident.
Frequently Asked Questions
Does QuickBooks have a nonprofit edition?
Yes. QuickBooks Desktop Premier and Enterprise include a Nonprofit edition with nonprofit terminology, a nonprofit chart of accounts and nonprofit reports.
Can QuickBooks Desktop produce Form 990 reports?
The Nonprofit edition includes reports that help prepare Form 990, especially functional expense reporting by program, management and fundraising. Your accountant will still prepare the return itself.
How do nonprofits track restricted funds in QuickBooks?
Most small nonprofits use classes or jobs to track restricted gifts and grants, along with net asset accounts for funds with donor restrictions. Ask your accountant to confirm the structure for your grants.
Can volunteers use QuickBooks at the same time?
Yes. Premier supports up to five simultaneous users, each needing their own license seat. Give each volunteer their own login with limited access.
Setting Up Books for Your Nonprofit? We Can Help.
We're real people who know QuickBooks inside and out.
Phone: (870) 232-6314
Email: info@accountingscart.com
Keep reading
More from the blog

By Craig Winston • October 24, 2026
Is QuickBooks Desktop Being Discontinued? Here's What's Actually Happening
Intuit changed how it sells QuickBooks Desktop, and the headlines got it half right. Here's what actually stopped, what still works, and what your options are in 2026.
Read more →
By Sandra Mitchell • October 24, 2026
QuickBooks Desktop Pricing in 2026: Every Option Explained
What does QuickBooks Desktop really cost in 2026? Here's every one-time and subscription option, the costs nobody mentions, and how to work out what's cheapest for you.
Read more →
By Craig Winston • October 24, 2026
Can You Still Buy QuickBooks Desktop Pro in 2026?
Intuit stopped selling QuickBooks Desktop Pro to new US customers, but you can still buy a genuine license. Here's where, what's left, and what to check before you pay.
Read more →
By Karen Liu • October 24, 2026
QuickBooks Desktop for Contractors: A Practical Job Costing Guide
Most contractors know their revenue. Far fewer know their profit per job. Here's how to set up QuickBooks Desktop for real job costing, estimates vs actuals and progress billing.
Read more →